set_simples_out_of_stock.php

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<?php
declare(strict_types=1);

use Magento\InventoryApi\Api\GetSourceItemsBySkuInterface;
use Magento\Inventory\Model\SourceItem\Command\SourceItemsSave;
use Magento\InventoryApi\Api\Data\SourceItemInterface;
use Magento\InventoryApi\Api\SourceItemRepositoryInterface;
use Magento\TestFramework\Helper\Bootstrap;

$sourceItemRepository = Bootstrap::getObjectManager()->create(SourceItemRepositoryInterface::class);

$getSourceItemsBySku = Bootstrap::getObjectManager()->create(GetSourceItemsBySkuInterface::class);

$sourceItemSave = Bootstrap::getObjectManager()->create(SourceItemsSave::class);

$skuList = ['simple_11', 'simple_21', 'simple_31'];
foreach ($skuList as $sku) {
    $sourceItems = $getSourceItemsBySku->execute($sku);
    $changesSourceItems = [];
    foreach ($sourceItems as $sourceItem) {
        $sourceItem->setStatus(SourceItemInterface::STATUS_OUT_OF_STOCK);
        $changesSourceItems[] = $sourceItem;
    }
    $sourceItemSave->execute($changesSourceItems);
}